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Innovative Management of Animal Genetic Resources


This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 677353
  • Objectives
  • Project overview
  • Consortium
  • Work Plan
    • Multi-actor participation and knowledge exchange
    • Enhancing gene bank functioning to improve quality and access transparency
    • Improving reproductive technologies for gene banking
    • Innovative genomic characterisation for better evaluation of genetic collections
    • Information system for data integration and data sharing
    • Sustainable and innovative use of genetic collections
  • Case studies
  • Deliverables
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  • Publications

  • Articles in peer-review journals
  • Book Chapters
  • Proceedings in Conferences/Workshops
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  • PhD Thesis
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Articles in peer-review journals

Knowledge about genetic resources

Authors Title Journal Date DOI Repository Link
(462) Groß C., Chiara Bortoluzzi, Dick de Ridder, Hendrik-Jan Megens, Martien AM Groenen, Marce lReinders, Mirte Bosse Evolutionarily conserved non-protein-coding regions in the chicken genome harbor functionally important variation bioRxiv preprint 3/2020 10.1101/2020.03.27.012005
(11) Capra E., Barbara Lazzari, Federica Turri, Paola Cremonesi, Antônia Moemia Rodrigues Portela, Paolo Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus BMC Genomics 12/2019 10.1186/s12864-019-6317-6
(14) Breukelen A. E., Harmen P. Doekes, Jack J. Windig, Kor Oldenbroek Characterization of Genetic Diversity Conserved in the Gene Bank for Dutch Cattle Breeds Diversity 11/2019 10.3390/d11120229
(18) Doekes H. P., Roel F. Veerkamp, Piter Bijma, Gerben de Jong, Sipke J. Hiemstra, Jack J. Windig Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein–Friesian dairy cattle Genetics Selection Evolution 9/2019 10.1186/s12711-019-0497-z
(20) Selmoni O., Elia Vajana, Annie Guillaume, Estelle Rochat, Stéphane Joost Sampling strategy optimization to increase statistical power in landscape genomics: A simulation-based approach Molecular Ecology Resources 9/2019 10.1111/1755-0998.13095
(21) Onzima R.B., Maulik R. Upadhyay, Harmen P. Doekes, Luiz. F. Brito, Mirte Bosse, Egbert Kanis, Martie Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds Frontiers in Genetics 8/2019 10.3389/fgene.2018.00318
(22) Fouchécourt S., Floriane Picolo, Sébastien Elis, Charlotte Lécureuil, Aurore Thélie, Marina Govoroun An evolutionary approach to recover genes predominantly expressed in the testes of the zebrafish, chicken and mouse BMC Evolutionary Biology 7/2019 10.1186/s12862-019-1462-8
(27) Bortoluzzi C., Mirte Bosse, Martijn F. L. Derks, Richard P. M. A. Crooijmans, Martien A. M. Groenen, The type of bottleneck matters: Insights into the deleterious variation landscape of small managed populations Evolutionary Applications 3/2019 10.1111/eva.12872
(28) Derks M.F.L., Arne B. Gjuvsland, Mirte Bosse, Marcos S. Lopes, Maren van Son, Barbara Harlizius, Bea Loss of function mutations in essential genes cause embryonic lethality in pigs PLOS Genetics 3/2019 10.1371
/journal.pgen.1008055
(31) Upadhyay M., Chiara Bortoluzzi, Mario Barbato, Paolo Ajmone-Marsan, Licia Colli, Catarina Ginja, Tad Deciphering the patterns of genetic admixture and diversity in southern European cattle using genome-wide SNPs Evolutionary Applications 1/2019 10.1111/eva.12770
(39) Derks M. F. L., Marcos S. Lopes, Mirte Bosse, Ole Madsen, Bert Dibbits, Barbara Harlizius, Martien A Balancing selection on a recessive lethal deletion with pleiotropic effects on two neighboring genes in the porcine genome PLOS Genetics 9/2018 10.1371
/journal.pgen.1007661
(42) Wu Z., Martijn F. L. Derks, Bert Dibbits, Hendrik-Jan Megens, Martien A. M. Groenen, Richard P. M. A A Novel Loss-of-Function Variant in Transmembrane Protein 263 (TMEM263) of Autosomal Dwarfism in Chicken Frontiers in Genetics 6/2018 10.3389/fgene.2018.00193
(45) Derks M. F. L., Hendrik-Jan Megens, Mirte Bosse, Jeroen Visscher, Katrijn Peeters, Marco C. A. M. Bi A survey of functional genomic variation in domesticated chickens Genetics Selection Evolution 4/2018 10.1186/s12711-018-0390-1
(47) Bortoluzzi C., Richard P. M. A. Crooijmans, Mirte Bosse, Sipke Joost Hiemstra, Martien A. M. Groenen The effects of recent changes in breeding preferences on maintaining traditional Dutch chicken genomic diversity Heredity 3/2018 10.1038/s41437-018-0072-3
(52) Yang B., Leilei Cui, Miguel Perez-Enciso, Aleksei Traspov, Richard P. M. A. Crooijmans, Natalia Zino Genome-wide SNP data unveils the globalization of domesticated pigs Genetics Selection Evolution 9/2017 10.1186/s12711-017-0345-y
(56) Lenstra J. A., J. Tigchelaar, I. Biebach, J.H. Hallsson, J. Kantanen, V.H. Nielsen, F. Pompanon, S. Microsatellite diversity of the Nordic type of goats in relation to breed conservation: how relevant is pure ancestry? Journal of Animal Breeding and Genetics 4/2017 10.1111/jbg.12226
(62) Eynard S. E., J. J. Windig, S. J. Hiemstra, M. P. L. Calus Whole-genome sequence data uncover loss of genetic diversity due to selection 4/2016 10.1186/s12711-016-0210-4



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